Blueberry Muffins with Cheesecake Center

Section: Start Your Day Deliciously

These blueberry cream cheese muffins combine the best of two worlds: moist, berry-studded cake and rich cheesecake filling. The batter uses both sour cream and butter for tenderness, while fresh blueberries provide bursts of fruity flavor. Each muffin hides a sweetened cream cheese center that bakes into a creamy surprise. The finishing touch is a generous buttery crumb topping that adds texture and sweetness. Optional glaze provides extra indulgence. These muffins work equally well for breakfast, brunch or dessert, with a preparation time of just 45 minutes total.

Anna smiles for the camera.
Brought to you by Sarah Johnson
Last updated on Fri, 01 Aug 2025 09:05:18 GMT
A muffin with blueberries and cream cheese. Bookmark
A muffin with blueberries and cream cheese. | yumloop.com

This blueberry cream cheese muffin recipe transforms ordinary mornings into something special with its surprise cheesecake center and buttery crumb topping. I discovered this recipe during a rainy weekend when I needed something to brighten our family breakfast, and it's now our go-to treat when we have overnight guests.

I originally created these for my daughter's birthday breakfast in place of cake, and the tradition has stuck for five years running. The look on everyone's face when they discover the creamy center makes the extra effort completely worthwhile.

Ingredients

  • All purpose flour creates the perfect tender crumb in these muffins, use unbleached for best flavor
  • Granulated sugar provides sweetness while brown sugar adds moisture and a caramel note
  • Baking powder and baking soda work together to create the perfect rise
  • Unsalted butter adds richness and allows you to control the salt content
  • Sour cream is the secret to incredibly moist muffins that stay fresh for days
  • Fresh blueberries offer pops of juicy flavor and beautiful color throughout
  • Cream cheese creates that luxurious cheesecake center that makes these muffins special
  • Cinnamon in the crumb topping adds a warm spice note that complements the blueberries

Step-by-Step Instructions

Preheat and Prepare
Turn your oven to 375°F while you line your muffin tin with paper liners. This temperature is crucial for getting that perfect dome on top without burning the edges.
Create the Filling
Beat room temperature cream cheese with powdered sugar and vanilla until completely smooth and slightly fluffy. Cold cream cheese will leave lumps, so make sure it sits out for at least 30 minutes before mixing.
Mix the Crumb Topping
Combine the dry ingredients for the topping first, then work in the cold butter using your fingertips until you have pea sized crumbles. The butter must be cold to create that perfect crumbly texture.
Prepare the Batter
Whisk all dry ingredients thoroughly before introducing wet ingredients. When combining, use a folding motion rather than vigorous stirring to keep the muffins tender. Coat the blueberries lightly in flour before folding them in to prevent sinking.
Layer the Components
Start with a thin layer of batter to create a base that prevents the cream cheese from sinking. Add a generous tablespoon of cream cheese filling, then cover completely with more batter. The key is ensuring the cream cheese stays in the center.
Bake to Perfection
Position the muffin tin in the center of the oven where heat distributes most evenly. The 22 to 25 minute bake time is crucial. Look for golden edges and a slightly firm top that springs back when touched.
A muffin with blueberries and cream cheese.
A muffin with blueberries and cream cheese. | yumloop.com

The cream cheese filling is what makes these truly special. I discovered its magic when trying to use up leftover cheesecake batter one Sunday morning. My husband declared them better than bakery muffins, and now I always keep cream cheese on hand just for this recipe.

Storage Solutions

These muffins maintain their moisture remarkably well when stored properly. Keep them in an airtight container at room temperature for up to 2 days. For longer storage, refrigerate them for up to 5 days, though the texture is best if you warm them slightly before eating. When freezing, wrap each muffin individually in plastic wrap before placing in a freezer bag to prevent freezer burn.

Customization Options

The versatility of this recipe allows for endless variations. Swap blueberries for raspberries or blackberries for a different berry experience. Chocolate chips work beautifully with the cream cheese filling for a more dessert like treat. For a tropical twist, try adding 1/2 cup of toasted coconut to the batter and using diced mango instead of blueberries. The base recipe remains the same, making this a perfect template for seasonal adaptations.

Serving Suggestions

These muffins shine as the centerpiece of a breakfast spread alongside fresh fruit and coffee. For an elegant brunch, serve them slightly warm with a dollop of lemon curd or berry compote. They also make a wonderful afternoon treat with tea, especially when drizzled with the optional glaze. For dessert, warm a muffin slightly and serve with a small scoop of vanilla ice cream for an impressive but easy finale to dinner.

Common Recipe Questions

→ Can I use frozen blueberries instead of fresh?

Yes, you can use frozen blueberries. Don't thaw them first - add them frozen directly to the batter. This prevents the color from bleeding too much. You may need to increase baking time by 2-3 minutes.

→ How should I store these muffins?

Because of the cream cheese filling, these muffins should be refrigerated after the first day. Store in an airtight container for up to 4 days in the refrigerator. Let come to room temperature before serving for best flavor and texture.

→ Can I make these muffins ahead of time?

Yes! You can prepare the batter and filling the night before and refrigerate separately. In the morning, assemble and bake. Alternatively, bake completely and freeze for up to 3 months. Thaw overnight in the refrigerator.

→ What can I substitute for sour cream?

Greek yogurt is the best substitute for sour cream in this recipe. It provides similar moisture and tanginess. Full-fat versions work best, but low-fat will also work with slightly less rich results.

→ Why did my cream cheese filling sink to the bottom?

This can happen if the filling is too thin. Make sure your cream cheese is just softened, not warm or melted. Also ensure you have enough batter under the filling to support it during baking.

→ Can I make these without the crumb topping?

Absolutely! While the crumb topping adds texture and sweetness, these muffins are delicious even without it. You can simply omit the topping or replace it with a sprinkle of coarse sugar before baking.

Blueberry Cream Cheese Muffins

Soft muffins with juicy blueberries, a cheesecake center, and buttery crumb topping - perfect for any time of day.

Preparation Time
20 minutes
Cooking Time
25 minutes
Total Cooking Time
45 minutes
Brought to you by: Sarah Johnson

Recipe Category: Breakfast & Brunch

Experience Level: Intermediate Skill

Type of Cuisine: American

Recipe Output: 12 Servings Per Recipe (12 muffins)

Diet Preferences: Vegetarian Option

What You Need

→ For the Muffins

01 2 cups all-purpose flour
02 1/2 cup granulated sugar
03 1/4 cup brown sugar
04 2 tsp baking powder
05 1/2 tsp baking soda
06 1/4 tsp salt
07 1/2 cup unsalted butter, melted
08 2 large eggs
09 3/4 cup sour cream
10 1/4 cup whole milk
11 1 1/2 cups fresh blueberries (plus extra for topping)
12 1 tsp vanilla extract

→ For the Cheesecake Filling

13 8 oz cream cheese, softened
14 1/4 cup powdered sugar
15 1 tsp vanilla extract

→ For the Crumb Topping

16 1/2 cup all-purpose flour
17 1/4 cup granulated sugar
18 1/4 cup brown sugar
19 1/4 tsp cinnamon
20 1/4 cup unsalted butter, cold and cubed

→ Optional Glaze

21 1/2 cup powdered sugar
22 1-2 tbsp milk

How to Make It

Step 01

Preheat oven to 375°F (190°C). Line a 12-cup muffin pan with paper liners.

Step 02

Beat softened cream cheese with powdered sugar and vanilla until smooth. Set aside.

Step 03

In a small bowl, mix flour, sugars, and cinnamon. Cut in cold butter with a fork or pastry cutter until crumbly.

Step 04

In a large bowl, whisk together flour, baking powder, baking soda, salt, and sugars. In another bowl, mix melted butter, eggs, sour cream, milk, and vanilla. Combine wet and dry ingredients just until blended. Gently fold in blueberries.

Step 05

Fill each muffin liner about 1/3 full with batter, add a spoonful of cheesecake filling, then cover with more batter until 3/4 full. Sprinkle crumb topping generously over each muffin.

Step 06

Bake for 22-25 minutes, or until muffins are golden and a toothpick inserted (away from the cream center) comes out clean.

Step 07

Whisk powdered sugar and milk, then drizzle over cooled muffins.

Additional Tips

  1. Soft, moist, and bursting with juicy blueberries, these muffins have a surprise creamy cheesecake center and a buttery crumb topping that makes them irresistible! Perfect for breakfast, brunch, or dessert.

Essential Tools

  • 12-cup muffin pan
  • Muffin liners
  • Mixing bowls
  • Electric mixer
  • Fork or pastry cutter

Allergen Info

Check each ingredient for potential allergens. If in doubt, consult a medical professional.
  • Contains dairy (butter, cream cheese, sour cream, milk)
  • Contains eggs
  • Contains wheat (flour)

Nutritional Info (per portion)

Keep in mind, this data is for informational purposes only and isn't medical advice.
  • Calories: 310
  • Fat Content: 15 grams
  • Carbohydrate Content: 40 grams
  • Protein Content: 4 grams