
This small batch of apple pumpkin streusel muffins brings together the best fall flavors in one perfect treat. The combination of sweet pumpkin, fresh apple chunks and warm spices creates irresistible muffins topped with a buttery apple streusel that's perfect for cool autumn mornings.
I first created these when looking for ways to use leftover canned pumpkin during apple season. Now they've become my signature fall breakfast treat that friends request as soon as the leaves start changing.
Ingredients
- All purpose flour creates a tender muffin base while providing structure
- Cold unsalted butter crucial for creating those perfect streusel crumbs
- Pumpkin pie spice delivers warm autumn flavors without measuring multiple spices
- Fresh Honeycrisp apples provide sweet juicy pockets throughout the muffins
- Sour cream adds moisture and tenderness to the muffin crumb
- Pure canned pumpkin brings real pumpkin flavor use Libbys for best consistency
- Brown sugar adds moisture and deeper caramel notes than white sugar alone
Step-by-Step Instructions
- Prepare the streusel
- Mix flour sugars salt and cinnamon in a small bowl. Work the cold butter cubes into the mixture with your fingertips until you have pea sized crumbles. The warmth from your fingers will slightly soften the butter creating the perfect texture. Fold in the reserved diced apples and refrigerate until needed.
- Create the wet mixture
- Combine sour cream pumpkin juice sugars egg yolk and vanilla in a medium bowl using a fork. Mix until completely smooth which ensures even distribution of flavors. The mixture should be thick but pourable. Gently fold in the apple cubes leaving some visible for texture.
- Combine dry ingredients
- Whisk together flour baking soda salt and pumpkin pie spice in a separate bowl until evenly distributed. This prevents any pockets of baking soda that could create bitter spots in your finished muffins.
- Mix batter without overmixing
- Sprinkle the dry ingredients over the wet ingredients and fold together with a spatula using a gentle cutting motion. Stop mixing the moment no dry streaks remain. Overmixing develops gluten which results in tough muffins rather than tender ones.
- Fill muffin cups and top with streusel
- Divide batter evenly among four muffin liners filling each about three quarters full. Generously sprinkle the refrigerated streusel over each muffin pressing slightly so it adheres to the batter.
- Employ the high heat trick
- Bake at 425°F for exactly 5 minutes this initial high heat causes the muffins to rise quickly creating bakery style domed tops. Then reduce to 350°F and continue baking until a toothpick comes out mostly clean with a few moist crumbs.

The special high heat then low heat baking method is my secret trick for professional looking muffins. I discovered it after years of flat topped homemade muffins that never looked like bakery ones. The sudden high heat creates steam that pushes the tops up before setting the structure at the lower temperature.
Making Ahead and Storage
These muffins store beautifully at room temperature in an airtight container for up to 5 days. The moisture from the pumpkin and apples keeps them from drying out unlike many other muffin recipes. For longer storage wrap individual muffins in plastic wrap then place in a freezer bag and freeze for up to 3 months. Thaw at room temperature for about an hour before enjoying.
Perfect Pairing Ideas
These muffins shine when served alongside a hot beverage that complements their spiced flavor profile. Try them with a chai latte steaming apple cider or coffee with a splash of cream. For a complete breakfast pair with Greek yogurt and a drizzle of honey or serve them as part of a fall brunch spread with scrambled eggs and fresh fruit.
Customize Your Muffins
While this recipe is perfect as written you can easily adapt it to suit your preferences. Swap Honeycrisp apples for Granny Smith if you prefer more tartness or substitute chopped walnuts or pecans for some of the apple in the streusel for added crunch. You can also add a pinch of cardamom or ginger to the spice mix for a more complex flavor profile or drizzle cooled muffins with a simple powdered sugar glaze.
Common Recipe Questions
- → Can I double this muffin recipe?
Yes, this small batch recipe can be easily doubled to make 8 muffins instead of 4. Simply double all ingredients while following the same mixing method and baking instructions. The high-heat then low-heat baking technique will still work perfectly for the larger batch.
- → What's the best apple variety to use in these muffins?
Honeycrisp apples are recommended for their perfect balance of sweetness and structure, but you can substitute with your preferred variety. Granny Smith provides more tartness, while Gala or Fuji offer additional sweetness. The key is choosing firm apples that hold their shape during baking.
- → Why start baking at high heat then reduce the temperature?
The initial 5 minutes at 425°F creates a quick rise that helps form perfectly domed muffin tops. Reducing to 350°F afterwards allows the centers to bake through without burning the tops. This technique is crucial for achieving bakery-style muffins with appealing rounded tops.
- → What can I do with leftover canned pumpkin?
Leftover pumpkin puree can be refrigerated for 5-7 days or frozen in tablespoon portions for future use. It works beautifully in other small-batch pumpkin treats, smoothies, oatmeal, or even stirred into pasta sauce. For best results, use pure pumpkin rather than pumpkin pie filling.
- → Can these muffins be made into mini muffins?
Yes, this batter can be converted to mini muffins, yielding approximately 10-12 mini muffins. For mini versions, skip the initial high-heat baking and bake at a consistent 350°F, checking for doneness around 12 minutes. The streusel topping works well for mini muffins too, though you'll use less per muffin.
- → How should I store these muffins?
Store muffins in an airtight container at room temperature for 3-5 days. For longer storage, wrap individual muffins in plastic wrap, place in a freezer bag, and freeze for up to 3 months. Thaw frozen muffins at room temperature or microwave briefly for a warm treat.